PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00449g00319.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 295aa    MW: 32167.6 Da    PI: 7.2185
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00449g00319.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11556147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT eE+  l+ +v+++G g W+tI +          R+  ++k++w+++
  Peaxi162Scf00449g00319.1  5 KQKWTSEEEAALKAGVAKYGVGKWSTILKDPEfaavlHSRSNVDLKDKWRNL 56
                              79***********************************9************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.823161IPR017930Myb domain
SuperFamilySSF466893.14E-16258IPR009057Homeodomain-like
SMARTSM007172.8E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-15556IPR009057Homeodomain-like
PfamPF002492.6E-8556IPR001005SANT/Myb domain
CDDcd116603.04E-21656No hitNo description
SMARTSM005269.3E-16118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.18E-15118190IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-16119189IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.783120188IPR005818Linker histone H1/H5, domain H15
PfamPF005385.6E-11124182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTS EEEAALKAGV AKYGVGKWST ILKDPEFAAV LHSRSNVDLK DKWRNLHVMA  60
NGWGSRHRGR VVSKSIQPTP KHDDNTSVVS AAVENDIEVL DAKPLASSSD MLKDVGSKKP  120
NLRLDDLILE AIAKLKEPRG SSRNAISSYI EELCEAPPNF EKLLAANLKA LTEKGRLIKV  180
KNHYRIAPSR LSYNTRGGPF PLLMDGKQDS ALAVKNEIRI QTKSQVDAEL EQMKSMSAEE  240
AAAAAAQAVA EADAAMAEAE RAARIAEEAE AEAEAAQCFH EVALKALQHQ TIPVW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016506260.11e-146PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506327.11e-146PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506387.11e-146PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506453.11e-146PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506515.11e-146PREDICTED: telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-73TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0V0IBG01e-140A0A0V0IBG0_SOLCH; Putative telomere repeat-binding factor 1-like
STRINGSolyc02g064630.2.11e-131(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.37e-74telomere repeat binding factor 1